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Species belonging to selected taxon:

Manihot esculenta



ABOUT THIS RECORD

ID: MNEST045816
species: Manihot esculenta
source: microPC, original name: miR159

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGGATTGAAGGGAGCTCT

miRNA*
AGCTCCTTAAAGTCCAATA

mismatches: 2
bulges: 0

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pre-miRNA
GGAGCTCCTTAAAGTCCAATAGAGGATCTTGCAGGGTAGATTGAGCTGCTGAGCTATGGATACCACAGCCCTATCCCATAATAAAAGGGAGTTCTTTTTT
TCAAGTCTTCTTGGATAGGCTTGTGGCTTGCATATCTCTGGAGCTTCATTACCTTATTATGTTAGATCCTTGTTTGGATTGAAGGGAGCTCT


dot-bracket secondary structure
((((((((((..(((((((..((((((((.(((((((((...(((((.(.(((.((((.(..((((((.(((((((.........((((((..(((....
..))).))))))))))))).))))))..).)))).))).).)))))..)))))).....))).))))))))..)))))))..))))))))))



SIMILARITIES
miRBase rco-MIR159: 1e-26

PMRD vvi-miR159c: 3e-21

microPC miR159: 5e-94
UniProt no hits

RFAM MIR159: 2e-25

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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